| Session # |
Start Time |
End Time |
Type |
Authors(Speaker) |
Title |
Session Chair |
| |
08:30 |
09:30 |
Registration |
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| 1 |
09:30 |
10:30 |
Keynote Talk 1 |
Alexander Urban, Stanford University |
TBD |
Giltae Song |
| |
10:30 |
10:45 |
Coffee break |
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| 2 |
10:45 |
11:10 |
Proceeding talk 1 |
Ofek Shami-Schnitzer and Tamir Tuller |
Novel Driver Mutations in GCB Lymphoma Patients That Affect Transcription Factors Binding |
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| |
11:10 |
11:35 |
Proceeding talk 2 |
Yushu Liu and Luay Nakhleh |
Inferring Phylogenetic Trees of Cancer Evolution from Longitudinal Single-Cell Copy Number Profiles |
|
| |
11:35 |
12:00 |
Proceeding talk 3 |
Songdi Hu, Vladimir Reinharz and Olivier Tremblay-Savard |
Tree decomposition for reconstructing ancestral RNA sequences of multiple families |
|
| |
12:00 |
13:30 |
Lunch break |
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| 3 |
13:30 |
13:55 |
Proceeding talk 4 |
Reza Kalhor, Manuel Lafond and Celine Scornavacca |
Whole-genome duplication detection with phylogenomics reconciliation: a scalable approach |
|
| |
13:55 |
14:20 |
Proceeding talk 5 |
5. Alitzel López Sánchez, Guillaume E. Scholz, Peter F. Stadler and Manuel Lafond |
A Sankoff-Rousseau-like Algorithm for Minimizing Lateral Gene Transfers and Losses on Single Origin Characters |
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| |
14:20 |
14:45 |
Proceeding talk 6 |
Yongze Yin, Bryce Kille, Huw Ogilvie, Todd Treangen and Luay Nakhleh |
tMHG-Finder: Tree-guided Maximal Homologous Group Finder for Bacterial Genomes |
|
| |
14:45 |
15:10 |
Proceeding talk 7 |
Leo van Iersel, Mark Jones, Jannik Schestag, Celine Scornavacca and Mathias Weller |
Phylogenetic Network Diversity Parameterized by Reticulation Number and Beyond |
|
| |
15:10 |
15:35 |
Proceeding talk 8 |
Tanjeem Azwad Zaman, Rabib Jahin Ibn Momin and Md. Shamsuzzoha Bayzid |
On the robustness to gene tree rooting (or lack thereof) of triplet-based species tree estimation methods |
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| |
15:35 |
15:45 |
Coffee break |
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| 4 |
15:45 |
16:10 |
Proceeding talk 9 |
Hao Yu and Louxin Zhang |
Exact Counts of Binary Phylogenetic Networks with Two and Three Reticulation Events |
|
| |
16:10 |
16:35 |
Proceeding talk 10 |
Xintong Zhou and David Sankoff |
Ancestral pangenomes and their phylogenetic reconstruction |
|
| |
16:35 |
17:00 |
Proceeding talk 11 |
Navid Bin Hasan, Sohaib and Md. Shamsuzzoha Bayzid |
QT-WEAVER: Correcting quartet distribution improves phylogenomic analyses despite gene tree estimation error |
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| |
17:00 |
17:25 |
Proceeding talk 12 |
Kaari Landry and Olivier Tremblay-Savard |
Fast calculation of cherry distance on level-1 orchard networks: optimization, heuristic and implementation |
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| |
17:25 |
17:30 |
Closing remark |
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|
| |
17:30 |
19:30 |
Poster session I & Satellites Reception |
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| |
08:30 |
09:30 |
Registration |
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| 5 |
09:30 |
10:30 |
Keynote Talk II |
Choongwon Jeong, Seoul National University |
TBD |
|
| |
10:30 |
10:45 |
Coffee break |
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|
|
| 6 |
10:45 |
11:10 |
Proceeding talk 13 |
Meijun Gao and Kevin Liu |
Detecting and Mapping Local Model Violations During Biomolecular Sequence Analysis: a RE sampling and Visual EvALuation Approach |
|
| |
11:10 |
11:35 |
Proceeding talk 14 |
Martin Frith |
A simple way to find related sequences with position-specific probabilities |
|
| |
11:35 |
12:00 |
Proceeding talk 15 |
Sarwan Ali, Taslim Murad, Prakash Chourasia, Haris Mansoor, Imdadullah Khan, Pin-Yu Chen and Murray Patterson |
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification Tasks |
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| |
12:00 |
13:30 |
Lunch break |
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|
|
| 7 |
13:30 |
14:20 |
Keynote Talk III |
Eun-kyeong Jo, Chungnam National University |
When infection biology meets bioinformatics |
|
| |
14:20 |
14:45 |
Proceeding talk 16 |
Siyu Chen and David Sankoff |
Residual immunity and seasonality of an epidemic |
|
| |
14:45 |
15:10 |
Proceeding talk 17 |
Eric Chen, Tara Newman, John Tyson, Anthea Lam, Michael Chan, Agatha Jassem, Natalie Prystajecky, Shannon Russell and James Zlosnik |
Adapting the cov2clusters tool for clustering MPOXV whole genome sequences |
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| |
15:10 |
15:35 |
Proceeding talk 18 |
Muyao Huang and Martin Frith |
Probability-based sequence comparison finds the oldest ever nuclear mitochondrial DNA segments in mammalian genomes |
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| |
15:35 |
15:45 |
Coffee break |
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| 8 |
15:45 |
16:10 |
Proceeding talk 19 |
Triveni Shelke, Vanika Gupta and Ishaan Gupta |
Unraveling Insect Immunity: A Cross-Order Comparative Genomic Analysis of Key Immune Proteins |
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| |
16:10 |
16:35 |
Proceeding talk 20 |
Yue Zhang |
Analyzing Sequence Similarity Distributions in Salmonidae: A Branching Process Approach |
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| |
16:35 |
17:00 |
Proceeding talk 21 |
Katia Aviña-Padilla, Octavio Zambada-Moreno, Manuel A. Barrios-Izás, Michelle Bustamante-Castillo and Maribel Hernández-Rosales |
Evolutionary Reconstruction of Hormone-bHLH Regulatory Networks in Solanaceae: Phylogenomic Insights from PSTVd-Tomato Interactions |
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17:00 |
17:05 |
Closing remark |
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17:05 |
19:30 |
Poster session II & Welcome Reception |
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