| Session # |
Start Time |
End Time |
Type |
Authors(Speaker) |
Title |
Authors |
Session Chair |
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08:30 |
09:30 |
Registration |
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09:30 |
10:30 |
Keynote Talk 1 |
Alexander Urban, Stanford University |
Advanced experimental and computational genome analysis approaches to resolve complex genome variation associated with the human brain |
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Giltae Song, Pusan National University |
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10:30 |
10:45 |
Coffee break |
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| 1 |
10:45 |
11:10 |
Proceeding talk 1 |
Tamir Tuller, Tel Aviv University |
Novel Driver Mutations in GCB Lymphoma Patients That Affect Transcription Factors Binding |
Ofek Shami-Schnitzer and Tamir Tuller |
Maribel Hernández-Rosales, Cinvestav Irapuato |
| 1 |
11:10 |
11:35 |
Proceeding talk 2 - Video-recorded presentation |
Murray Patterson, Georgia State University |
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification Tasks |
Sarwan Ali, Taslim Murad, Prakash Chourasia, Haris Mansoor, Imdadullah Khan, Pin-Yu Chen and Murray Patterson |
Maribel Hernández-Rosales, Cinvestav Irapuato |
| 1 |
11:35 |
12:00 |
Proceeding talk 3 |
Olivier Tremblay-Savard, University of Manitoba |
Tree decomposition for reconstructing ancestral RNA sequences of multiple families |
Songdi Hu, Vladimir Reinharz and Olivier Tremblay-Savard |
Maribel Hernández-Rosales, Cinvestav Irapuato |
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12:00 |
13:30 |
Lunch break |
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| 2 |
13:30 |
13:55 |
Proceeding talk 4 |
Reza Kalhor, University of Sherbrooke |
Whole-genome duplication detection with phylogenomics reconciliation: a scalable approach |
Reza Kalhor, Manuel Lafond and Celine Scornavacca |
Olivier Tremblay-Savard, University of Manitoba |
| 2 |
13:55 |
14:20 |
Proceeding talk 5 |
Jannik Schestag, Deift University of Technology |
Phylogenetic Network Diversity Parameterized by Reticulation Number and Beyond |
Leo van lersel, Mark Jones, Jannik Schestag, Celine Scornavacca and Mathias Weller |
Olivier Tremblay-Savard, University of Manitoba |
| 2 |
14:20 |
14:45 |
Proceeding talk 6 |
Tanjeem Azwad Zaman, Bangladesh University of Engineering and Technology |
On the robustness to gene tree rooting (or lack thereof) of triplet-based species tree estimation methods |
Tanjeem Azwad Zaman, Rabib Jahin lbn Momin and Md. Sharmsuzzoha Bayzid |
Olivier Tremblay-Savard, University of Manitoba |
| 2 |
14:45 |
15:10 |
Long talk |
Leo Zeitler, Institut Pasteur |
Alignment-free integration of single-cell ATAC-seq across species with sPYce |
Leo Zeitler, Eulalie Liorzou, Anthony Lepelletier, Katie Leap, Maëlle Daunesse, Claire Lavergne and Camille Berthelot |
Olivier Tremblay-Savard, University of Manitoba |
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15:10 |
15:45 |
Coffee break |
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| 3 |
15:45 |
16:10 |
Proceeding talk 7 |
Hao Yu, National University of Singapore |
Exact Counts of Binary Phylogenetic Networks with Two and Three Reticulation Events |
Hao Yu and Louxin Zhang |
Tamir Tuller, Tel Aviv University |
| 3 |
16:10 |
16:35 |
Proceeding talk 8 |
Xintong Zhou, University of Ottawa |
Ancestral pangenomes and their phylogenetic reconstruction |
Xintong Zhou and David Sankoff |
Tamir Tuller, Tel Aviv University |
| 3 |
16:35 |
17:00 |
Proceeding talk 9 |
Navid Bin Hasan, Bangladesh University of Engineering and Technology |
QT-WEAVER: Correcting quartet distribution improves phylogenomic analyses despite gene tree estimation error |
Navid Bin Hasan, Sohaib and Md. Shamsuzzoha Bayzid |
Tamir Tuller, Tel Aviv University |
| 3 |
17:00 |
17:25 |
Proceeding talk 10 |
Kaari Landry, University of Manitoba |
Fast calculation of cherry distance on level-1 orchard networks: optimization, heuristic and implementation |
Kaari Landry and Olivier Tremblay-Savard |
Tamir Tuller, Tel Aviv University |
| |
17:25 |
17:30 |
Closing remark |
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17:30 |
19:30 |
Poster session I & Satellites Reception |
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08:30 |
09:30 |
Registration |
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09:30 |
10:30 |
Keynote Talk II |
Choongwon Jeong, Seoul National University |
Recombination between chromosomes from divergent lineages harbors key information to reconstruct evolutionary history |
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Giltae Song, Pusan National University |
| |
10:30 |
10:45 |
Coffee break |
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| 4 |
10:45 |
11:10 |
Proceeding talk 11 |
Kevin Liu, Michigan State University |
Detecting and Mapping Local Model Violations During Biomolecular Sequence Analysis: a RE sampling and Visual EvALuation Approach |
Meijun Gao and Kevin Liu |
Luay Nakhleh, Rice University |
| 4 |
11:10 |
11:35 |
Proceeding talk 12 |
Martin Frith, University of Tokyo |
A simple way to find related sequences with position-specific probabilities |
Martin Frith |
Luay Nakhleh, Rice University |
| 4 |
11:35 |
12:00 |
Proceeding talk 13 |
Alitzel Lopez, University of Sherbrooke |
A Sankoff-Rousseau-like Algorithm for Minimizing Lateral Gene Transfers and Losses on Single Origin Characters |
Alitzel López Sánchez, Guillaume E. Scholz, Peter F. Stadler and Manuel Lafond |
Luay Nakhleh, Rice University |
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12:00 |
13:30 |
Lunch break |
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13:30 |
14:20 |
Keynote Talk III |
Eun-kyeong Jo, Chungnam National University |
When infection biology meets bioinformatics |
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Giltae Song, Pusan National University |
| 5 |
14:20 |
14:45 |
Proceeding talk 14 - Video-recorded presentation |
Siyu Chen, Cornell University |
Residual immunity and seasonality of an epidemic |
Siyu Chen and David Sankoff |
Martin Frith, University of Tokyo |
| 5 |
14:45 |
15:10 |
Proceeding talk 15 |
Eric Chen, University of British Columbia |
Adapting the cov2clusters tool for clustering MPOXV whole genome sequences |
Eric Chen, Tara Newman, John Tyson, Anthea Lam, Michael Chan, Agatha Jassem, Natalie Prystajecky, Shannon Russell and James Zlosnik |
Martin Frith, University of Tokyo |
| 5 |
15:10 |
15:35 |
Proceeding talk 16 |
Muyao Huang, University of Tokyo |
Probability-based sequence comparison finds the oldest ever nuclear mitochondrial DNA segments in mammalian genomes |
Muyao Huang and Martin Frith |
Martin Frith, University of Tokyo |
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15:35 |
15:45 |
Coffee break |
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| 6 |
15:45 |
16:10 |
Proceeding talk 17 |
Triveni Shelke, Indian Institute of Technology, Delhi |
Unraveling Insect Immunity: A Cross-Order Comparative Genomic Analysis of Key Immune Proteins |
Triveni Shelke, Vanika Gupta and Ishaan Gupta |
Kevin Liu, Michigan State University |
| 6 |
16:10 |
16:35 |
Proceeding talk 18 |
Yue Zhang, Thompson Rivers University |
Analyzing Sequence Similarity Distributions in Salmonidae: A Branching Process Approach |
Yue Zhang |
Kevin Liu, Michigan State University |
| 6 |
16:35 |
17:00 |
Proceeding talk 19 |
Katia Aviña-Padilla, Cinvestav Irapuato |
Evolutionary Reconstruction of Hormone-bHLH Regulatory Networks in Solanaceae: Phylogenomic Insights from PSTVd-Tomato Interactions |
Katia Aviña-Padilla, Octavio Zambada-Moreno, Manuel A. Barrios-Izás, Michelle Bustamante-Castillo and Maribel Hernández-Rosales |
Kevin Liu, Michigan State University |
| 6 |
17:00 |
17:20 |
Proceeding talk 20 |
Luay Nakhleh, Rice University |
Inferring Phylogenetic Trees of Cancer Evolution from Longitudinal Single-Cell Copy Number Profiles |
Yushu Liu and Luay Nakhleh |
Kevin Liu, Michigan State University |
| 6 |
17:20 |
17:40 |
Proceeding talk 21 |
Luay Nakhleh, Rice University |
tMHG-Finder: Tree-guided Maximal Homologous Group Finder for Bacterial Genomes |
Yongze Yin, Bryce Kille, Huw Ogilvie, Todd Treangen and Luay Nakhleh |
Kevin Liu, Michigan State University |
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17:00 |
17:05 |
Closing remark |
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17:05 |
19:30 |
Poster session II & Welcome Reception |
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